PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 678378683
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
Family NF-YB
Protein Properties Length: 204aa    MW: 22796.3 Da    PI: 7.1285
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
678378683genomeUGSPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.13.4e-5541136297
      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 
                +eqdrflPianv+rimkkv+P+n+kisk+aketvqecvsefisfvt+easdkcqrekrktingdd+lwa+ tlGfe yv+plk+yl+kyr++eg+k
  678378683  41 KEQDRFLPIANVGRIMKKVIPGNGKISKEAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDILWAIITLGFEAYVDPLKIYLTKYRDMEGQK 136
                89*******************************************************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-5134149IPR009072Histone-fold
SuperFamilySSF471133.88E-3943143IPR009072Histone-fold
PfamPF008084.7E-2846110IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.1E-197492No hitNo description
PROSITE patternPS0068507793IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.1E-1993111No hitNo description
PRINTSPR006152.1E-19112130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MKRKRENIRA EDDHGGTCPE TSSSNTTSSL NNNNDTNNNN KEQDRFLPIA NVGRIMKKVI  60
PGNGKISKEA KETVQECVSE FISFVTGEAS DKCQREKRKT INGDDILWAI ITLGFEAYVD  120
PLKIYLTKYR DMEGQKLNAP KQQQIDQQQN HQTLGFGGSG AGGVYSSSSV SHPSSFMAND  180
HHLFPLPFSQ PSPLPKPDTD EHWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B5e-4541131292Transcription factor HapC (Eurofung)
4g92_B5e-4541131292Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099714.12e-75PREDICTED: nuclear transcription factor Y subunit B-7
SwissprotQ9SIT98e-67NFYB7_ARATH; Nuclear transcription factor Y subunit B-7
TrEMBLM1BE774e-72M1BE77_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000431761e-71(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G13570.18e-63nuclear factor Y, subunit B7